Detailed information of SNP:
|
SNP ID:
sf0420072223(Gbrowse)
Chromosome: chr04 Position: 20072223 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420072223 | T->C | INTERGENIC | None |