Detailed information of SNP:
|
SNP ID:
sf0420073971(Gbrowse)
Chromosome: chr04 Position: 20073971 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 88.36% | 11.64% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 462 | 66.45% | 33.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 50.50% | 49.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420073971 | T->C | LOC_Os04g33470(LOC_Os04g33470.2) | INTRON |
| sf0420073971 | T->C | LOC_Os04g33470(LOC_Os04g33470.1) | INTRON |