Detailed information of SNP:
|
SNP ID:
sf0420107347(Gbrowse)
Chromosome: chr04 Position: 20107347 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.89% | 23.11% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420107347 | T->C | LOC_Os04g33510(LOC_Os04g33510.2) | UTR_3_PRIME |
| sf0420107347 | T->C | LOC_Os04g33510(LOC_Os04g33510.1) | UTR_3_PRIME |