Detailed information of SNP:



SNP ID: sf0420114230(Gbrowse)

Chromosome: chr04

Position: 20114230
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 81.32% 18.68%
All Indica799 99.75% 0.25%
All Japonica497 48.49% 51.51%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 26.27% 73.73%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420114230 A->G LOC_Os04g33540(LOC_Os04g33540.1) INTRON