Detailed information of SNP:
|
SNP ID:
sf0420123302(Gbrowse)
Chromosome: chr04 Position: 20123302 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.19% | 15.81% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 61.62% | 38.38% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420123302 | T->A | INTERGENIC | None |