Detailed information of SNP:
|
SNP ID:
sf0420131031(Gbrowse)
Chromosome: chr04 Position: 20131031 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 73.00% | 27.00% |
| All Indica | 795 | 93.33% | 6.67% |
| All Japonica | 494 | 39.27% | 60.73% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 25.45% | 74.55% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420131031 | T->C | INTERGENIC | None |