Detailed information of SNP:
|
SNP ID:
sf0420157127(Gbrowse)
Chromosome: chr04 Position: 20157127 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.71% | 31.29% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420157127 | T->C | INTERGENIC | None |