Detailed information of SNP:
|
SNP ID:
sf0420188508(Gbrowse)
Chromosome: chr04 Position: 20188508 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.38% | 40.62% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420188508 | A->T | INTERGENIC | None |