Detailed information of SNP:
|
SNP ID:
sf0420204352(Gbrowse)
Chromosome: chr04 Position: 20204352 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420204352 | A->G | LOC_Os04g33640(LOC_Os04g33640.2) | Synonymous |
| sf0420204352 | A->G | LOC_Os04g33640(LOC_Os04g33640.1) | Synonymous |