Detailed information of SNP:



SNP ID: sf0420204352(Gbrowse)

Chromosome: chr04

Position: 20204352
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 55.64% 44.36%
All Indica799 96.50% 3.50%
All Japonica496 0.00% 100.00%
Aus67 4.48% 95.52%
Indica I375 98.93% 1.07%
Indica II213 92.02% 7.98%
Indica Intermediate211 96.68% 3.32%
Temperate Japonica334 0.00% 100.00%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 33.33% 66.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420204352 A->G LOC_Os04g33640(LOC_Os04g33640.2) Synonymous
sf0420204352 A->G LOC_Os04g33640(LOC_Os04g33640.1) Synonymous