Detailed information of SNP:
SNP ID:
sf0420204352(Gbrowse)
Chromosome: chr04 Position: 20204352 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 55.64% | 44.36% |
All Indica | 799 | 96.50% | 3.50% |
All Japonica | 496 | 0.00% | 100.00% |
Aus | 67 | 4.48% | 95.52% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 92.02% | 7.98% |
Indica Intermediate | 211 | 96.68% | 3.32% |
Temperate Japonica | 334 | 0.00% | 100.00% |
Tropical Japonica | 94 | 0.00% | 100.00% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0420204352 | A->G | LOC_Os04g33640(LOC_Os04g33640.2) | Synonymous |
sf0420204352 | A->G | LOC_Os04g33640(LOC_Os04g33640.1) | Synonymous |