Detailed information of SNP:
|
SNP ID:
sf0420213315(Gbrowse)
Chromosome: chr04 Position: 20213315 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 52.46% | 47.54% |
| All Indica | 685 | 11.68% | 88.32% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 346 | 2.31% | 97.69% |
| Indica II | 166 | 28.31% | 71.69% |
| Indica Intermediate | 173 | 14.45% | 85.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420213315 | A->C | INTERGENIC | None |