Detailed information of SNP:
|
SNP ID:
sf0420296683(Gbrowse)
Chromosome: chr04 Position: 20296683 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 88.80% | 11.20% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 467 | 72.38% | 27.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 327 | 88.07% | 11.93% |
| Tropical Japonica | 77 | 36.36% | 63.64% |
| Japonica Intermediate | 63 | 34.92% | 65.08% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420296683 | A->G | LOC_Os04g33790(LOC_Os04g33790.1) | INTRON |