Detailed information of SNP:
|
SNP ID:
sf0420331894(Gbrowse)
Chromosome: chr04 Position: 20331894 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 96.43% | 3.57% |
| All Indica | 727 | 93.40% | 6.60% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 91.32% | 8.68% |
| Indica II | 196 | 97.96% | 2.04% |
| Indica Intermediate | 197 | 92.39% | 7.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420331894 | G->A | INTERGENIC | None |