Detailed information of SNP:
|
SNP ID:
sf0420384350(Gbrowse)
Chromosome: chr04 Position: 20384350 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 93.46% | 6.54% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 459 | 83.01% | 16.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 324 | 94.14% | 5.86% |
| Tropical Japonica | 79 | 62.03% | 37.97% |
| Japonica Intermediate | 56 | 48.21% | 51.79% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420384350 | G->A | INTERGENIC | None |