Detailed information of SNP:
|
SNP ID:
sf0420405341(Gbrowse)
Chromosome: chr04 Position: 20405341 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 53.01% | 46.99% |
| All Indica | 795 | 91.82% | 8.18% |
| All Japonica | 496 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420405341 | G->A | INTERGENIC | None |