Detailed information of SNP:
|
SNP ID:
sf0420411714(Gbrowse)
Chromosome: chr04 Position: 20411714 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 77.39% | 22.61% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 494 | 54.66% | 45.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 75.15% | 24.85% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420411714 | A->G | INTERGENIC | None |