Detailed information of SNP:
|
SNP ID:
sf0420428462(Gbrowse)
Chromosome: chr04 Position: 20428462 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1270 | 97.17% | 2.83% |
| All Indica | 653 | 94.64% | 5.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 286 | 95.45% | 4.55% |
| Indica II | 193 | 93.26% | 6.74% |
| Indica Intermediate | 174 | 94.83% | 5.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420428462 | T->C | INTERGENIC | None |