Detailed information of SNP:
|
SNP ID:
sf0420454382(Gbrowse)
Chromosome: chr04 Position: 20454382 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 65.25% | 34.75% |
| All Indica | 796 | 97.99% | 2.01% |
| All Japonica | 497 | 20.52% | 79.48% |
| Aus | 63 | 0.00% | 100.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420454382 | T->C | INTERGENIC | None |