Detailed information of SNP:
|
SNP ID:
sf0420482494(Gbrowse)
Chromosome: chr04 Position: 20482494 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 94.82% | 5.18% |
| All Indica | 792 | 98.99% | 1.01% |
| All Japonica | 476 | 89.92% | 10.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 97.54% | 2.46% |
| Tropical Japonica | 88 | 70.45% | 29.55% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420482494 | G->A | LOC_Os04g34100(LOC_Os04g34100.1) | INTRON |