Detailed information of SNP:
|
SNP ID:
sf0420487234(Gbrowse)
Chromosome: chr04 Position: 20487234 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.97% | 33.03% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 497 | 31.79% | 68.21% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 34.03% | 65.97% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420487234 | A->G | INTERGENIC | None |