Detailed information of SNP:



SNP ID: sf0420492961(Gbrowse)

Chromosome: chr04

Position: 20492961
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1392 53.38% 46.62%
All Indica774 17.96% 82.04%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I365 21.64% 78.36%
Indica II205 10.24% 89.76%
Indica Intermediate204 19.12% 80.88%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 65.00% 35.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420492961 G->A INTERGENIC None