Detailed information of SNP:
|
SNP ID:
sf0420493051(Gbrowse)
Chromosome: chr04 Position: 20493051 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 56.42% | 43.58% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 488 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 328 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420493051 | T->C | INTERGENIC | None |