Detailed information of SNP:
|
SNP ID:
sf0420495290(Gbrowse)
Chromosome: chr04 Position: 20495290 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.18% | 14.82% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 495 | 67.07% | 32.93% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420495290 | C->T | INTERGENIC | None |