Detailed information of SNP:
|
SNP ID:
sf0420506815(Gbrowse)
Chromosome: chr04 Position: 20506815 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.43% | 41.57% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420506815 | C->T | INTERGENIC | None |