Detailed information of SNP:
|
SNP ID:
sf0420527425(Gbrowse)
Chromosome: chr04 Position: 20527425 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 69.37% | 30.63% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 476 | 16.39% | 83.61% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 321 | 10.59% | 89.41% |
| Tropical Japonica | 89 | 23.60% | 76.40% |
| Japonica Intermediate | 66 | 34.85% | 65.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420527425 | C->T | INTERGENIC | None |