Detailed information of SNP:
SNP ID:
sf0420528455(Gbrowse)
Chromosome: chr04 Position: 20528455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1415 | 89.54% | 10.46% |
All Indica | 799 | 97.50% | 2.50% |
All Japonica | 493 | 78.30% | 21.70% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 95.20% | 4.80% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 82.69% | 17.31% |
Tropical Japonica | 90 | 75.56% | 24.44% |
Japonica Intermediate | 68 | 60.29% | 39.71% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0420528455 | G->A | INTERGENIC | None |