Detailed information of SNP:
|
SNP ID:
sf0420595787(Gbrowse)
Chromosome: chr04 Position: 20595787 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.79% | 6.21% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420595787 | G->T | INTERGENIC | None |