Detailed information of SNP:
SNP ID:
sf0420606409(Gbrowse)
Chromosome: chr04 Position: 20606409 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 54.12% | 45.88% |
All Indica | 799 | 92.24% | 7.76% |
All Japonica | 497 | 2.62% | 97.38% |
Aus | 67 | 0.00% | 100.00% |
Indica I | 375 | 95.73% | 4.27% |
Indica II | 213 | 84.51% | 15.49% |
Indica Intermediate | 211 | 93.84% | 6.16% |
Temperate Japonica | 335 | 1.79% | 98.21% |
Tropical Japonica | 94 | 3.19% | 96.81% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0420606409 | T->C | INTERGENIC | None |