Detailed information of SNP:
|
SNP ID:
sf0420616164(Gbrowse)
Chromosome: chr04 Position: 20616164 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1377 | 86.35% | 13.65% |
| All Indica | 794 | 99.37% | 0.63% |
| All Japonica | 497 | 73.24% | 26.76% |
| Aus | 35 | 2.86% | 97.14% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 82.99% | 17.01% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420616164 | C->G | INTERGENIC | None |