Detailed information of SNP:
|
SNP ID:
sf0420620597(Gbrowse)
Chromosome: chr04 Position: 20620597 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.81% | 44.19% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420620597 | G->A | LOC_Os04g34330(LOC_Os04g34330.1) | INTRON |