Detailed information of SNP:
|
SNP ID:
sf0420626179(Gbrowse)
Chromosome: chr04 Position: 20626179 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 93.61% | 6.39% |
| All Indica | 788 | 96.45% | 3.55% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420626179 | A->G | LOC_Os04g34340(LOC_Os04g34340.1) | INTRON |