Detailed information of SNP:
|
SNP ID:
sf0420629908(Gbrowse)
Chromosome: chr04 Position: 20629908 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 69.71% | 30.29% |
| All Indica | 728 | 60.16% | 39.84% |
| All Japonica | 490 | 91.63% | 8.37% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 346 | 65.61% | 34.39% |
| Indica II | 196 | 56.12% | 43.88% |
| Indica Intermediate | 186 | 54.30% | 45.70% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420629908 | A->G | INTERGENIC | None |