Detailed information of SNP:
|
SNP ID:
sf0420630666(Gbrowse)
Chromosome: chr04 Position: 20630666 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 54.95% | 45.05% |
| All Indica | 752 | 78.99% | 21.01% |
| All Japonica | 492 | 12.80% | 87.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 354 | 77.12% | 22.88% |
| Indica II | 202 | 77.72% | 22.28% |
| Indica Intermediate | 196 | 83.67% | 16.33% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420630666 | G->A | INTERGENIC | None |