Detailed information of SNP:
|
SNP ID:
sf0420630788(Gbrowse)
Chromosome: chr04 Position: 20630788 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 51.07% | 48.93% |
| All Indica | 782 | 72.76% | 27.24% |
| All Japonica | 497 | 11.67% | 88.33% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 71.20% | 28.80% |
| Indica II | 208 | 72.60% | 27.40% |
| Indica Intermediate | 206 | 75.73% | 24.27% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420630788 | G->A | INTERGENIC | None |