Detailed information of SNP:
|
SNP ID:
sf0420635446(Gbrowse)
Chromosome: chr04 Position: 20635446 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 51.17% | 48.83% |
| All Indica | 789 | 72.50% | 27.50% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 72.28% | 27.72% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420635446 | A->G | LOC_Os04g34350(LOC_Os04g34350.1) | Synonymous |