Detailed information of SNP:
|
SNP ID:
sf0420635572(Gbrowse)
Chromosome: chr04 Position: 20635572 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 60.43% | 39.57% |
| All Indica | 726 | 42.84% | 57.16% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 335 | 46.57% | 53.43% |
| Indica II | 194 | 40.21% | 59.79% |
| Indica Intermediate | 197 | 39.09% | 60.91% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420635572 | A->G | LOC_Os04g34350(LOC_Os04g34350.1) | Synonymous |