Detailed information of SNP:
|
SNP ID:
sf0420635727(Gbrowse)
Chromosome: chr04 Position: 20635727 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 74.07% | 25.93% |
| All Indica | 756 | 58.47% | 41.53% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 357 | 59.94% | 40.06% |
| Indica II | 206 | 58.25% | 41.75% |
| Indica Intermediate | 193 | 55.96% | 44.04% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420635727 | A->T | INTERGENIC | None |