Detailed information of SNP:
|
SNP ID:
sf0420640205(Gbrowse)
Chromosome: chr04 Position: 20640205 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 60.82% | 39.18% |
| All Indica | 795 | 88.81% | 11.19% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 371 | 88.14% | 11.86% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420640205 | T->C | LOC_Os04g34360(LOC_Os04g34360.1) | Non-Synonymous SNP |