Detailed information of SNP:
|
SNP ID:
sf0420640239(Gbrowse)
Chromosome: chr04 Position: 20640239 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 61.88% | 38.12% |
| All Indica | 781 | 90.65% | 9.35% |
| All Japonica | 492 | 23.78% | 76.22% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 369 | 90.51% | 9.49% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 330 | 13.03% | 86.97% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420640239 | A->G | LOC_Os04g34360(LOC_Os04g34360.1) | Non-Synonymous SNP |