Detailed information of SNP:
|
SNP ID:
sf0420650845(Gbrowse)
Chromosome: chr04 Position: 20650845 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 54.36% | 45.64% |
| All Indica | 790 | 86.08% | 13.92% |
| All Japonica | 497 | 13.28% | 86.72% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 367 | 89.37% | 10.63% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420650845 | G->A | LOC_Os04g34380(LOC_Os04g34380.1) | INTRON |