Detailed information of SNP:
|
SNP ID:
sf0420655905(Gbrowse)
Chromosome: chr04 Position: 20655905 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.91% | 32.09% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 496 | 27.82% | 72.18% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 17.31% | 82.69% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420655905 | C->T | INTERGENIC | None |