Detailed information of SNP:
|
SNP ID:
sf0420656474(Gbrowse)
Chromosome: chr04 Position: 20656474 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 66.38% | 33.62% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 25.75% | 74.25% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420656474 | G->A | INTERGENIC | None |