Detailed information of SNP:
|
SNP ID:
sf0420658261(Gbrowse)
Chromosome: chr04 Position: 20658261 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 63.51% | 36.49% |
| All Indica | 779 | 92.68% | 7.32% |
| All Japonica | 489 | 22.09% | 77.91% |
| Aus | 61 | 31.15% | 68.85% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 330 | 13.64% | 86.36% |
| Tropical Japonica | 91 | 50.55% | 49.45% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420658261 | G->A | LOC_Os04g34400(LOC_Os04g34400.1) | INTRON |