Detailed information of SNP:
|
SNP ID:
sf0420658807(Gbrowse)
Chromosome: chr04 Position: 20658807 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 65.04% | 34.96% |
| All Indica | 792 | 95.20% | 4.80% |
| All Japonica | 496 | 24.19% | 75.81% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420658807 | C->T | INTERGENIC | None |