Detailed information of SNP:
|
SNP ID:
sf0420661932(Gbrowse)
Chromosome: chr04 Position: 20661932 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.41% | 33.59% |
| All Indica | 794 | 95.09% | 4.91% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 17.91% | 82.09% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420661932 | T->C | INTERGENIC | None |