Detailed information of SNP:
|
SNP ID:
sf0420664238(Gbrowse)
Chromosome: chr04 Position: 20664238 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 50.97% | 49.03% |
| All Indica | 719 | 33.52% | 66.48% |
| All Japonica | 496 | 72.58% | 27.42% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 323 | 27.55% | 72.45% |
| Indica II | 201 | 28.86% | 71.14% |
| Indica Intermediate | 195 | 48.21% | 51.79% |
| Temperate Japonica | 334 | 82.34% | 17.66% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420664238 | G->A | LOC_Os04g34410(LOC_Os04g34410.1) | INTRON |