Detailed information of SNP:



SNP ID: sf0420664732(Gbrowse)

Chromosome: chr04

Position: 20664732
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1416 92.30% 7.70%
All Indica796 88.32% 11.68%
All Japonica497 99.20% 0.80%
Aus67 98.51% 1.49%
Indica I373 86.60% 13.40%
Indica II213 98.59% 1.41%
Indica Intermediate210 80.95% 19.05%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0420664732 G->A LOC_Os04g34410(LOC_Os04g34410.1) INTRON