Detailed information of SNP:
|
SNP ID:
sf0420664732(Gbrowse)
Chromosome: chr04 Position: 20664732 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.30% | 7.70% |
| All Indica | 796 | 88.32% | 11.68% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 86.60% | 13.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420664732 | G->A | LOC_Os04g34410(LOC_Os04g34410.1) | INTRON |