Detailed information of SNP:
|
SNP ID:
sf0420665385(Gbrowse)
Chromosome: chr04 Position: 20665385 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.70% | 32.30% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 17.31% | 82.69% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420665385 | A->G | LOC_Os04g34410(LOC_Os04g34410.1) | Synonymous |