Detailed information of SNP:
|
SNP ID:
sf0420665899(Gbrowse)
Chromosome: chr04 Position: 20665899 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420665899 | A->G | LOC_Os04g34410(LOC_Os04g34410.1) | Non-Synonymous SNP |