Detailed information of SNP:
|
SNP ID:
sf0420691758(Gbrowse)
Chromosome: chr04 Position: 20691758 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 95.89% | 4.11% |
| All Indica | 746 | 92.63% | 7.37% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 89.47% | 10.53% |
| Indica II | 200 | 99.00% | 1.00% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420691758 | G->A | LOC_Os04g34450(LOC_Os04g34450.1) | INTRON |