Detailed information of SNP:
|
SNP ID:
sf0420717916(Gbrowse)
Chromosome: chr04 Position: 20717916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.74% | 40.26% |
| All Indica | 791 | 29.84% | 70.16% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 30.11% | 69.89% |
| Indica II | 212 | 30.19% | 69.81% |
| Indica Intermediate | 207 | 28.99% | 71.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0420717916 | G->A | LOC_Os04g34500(LOC_Os04g34500.1) | INTRON |